Stanford Human Genome Center

Department of Genetics

Department of Biological Sciences

Morrison Institute for Population and Resource Studies

Stanford University

Stanford HGDP SNP Genotyping Data

The genotypes were generated on Illumina 650Y arrays, with a GenCall Score cutoff of 0.25. Samples with an overall call rate < 98.5% were removed. No filtering of SNPs was done, so be aware that low quality SNPs are included in these files.

Tab-delimited (matrix format) genotypes for 1043 samples (columns) and 660918 markers (rows). The forward strand is given, with no-calls designated "--".

Tab-delimited list of 660918 markers, including chromosome and Build 36.1 coordinates.

List of samples included.

If you find problems with these files please contact Devin Absher or Richard Myers.

Click here to download Stanford HGDP SNP Genotyping Data